cbcbeat
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1. cbcbeat package
cbcbeat
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B
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C
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D
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F
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G
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M
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V
A
applied_current() (cbcbeat.cardiacmodels.CardiacModel method)
B
BasicBidomainSolver (class in cbcbeat.bidomainsolver)
BasicCardiacODESolver (class in cbcbeat.cellsolver)
BasicMonodomainSolver (class in cbcbeat.monodomainsolver)
BasicSingleCellSolver (class in cbcbeat.cellsolver)
BasicSplittingSolver (class in cbcbeat.splittingsolver)
Beeler_reuter_1977 (class in cbcbeat.cellmodels.beeler_reuter_1977)
BidomainSolver (class in cbcbeat.bidomainsolver)
C
CardiacCellModel (class in cbcbeat.cellmodels.cardiaccellmodel)
CardiacModel (class in cbcbeat.cardiacmodels)
CardiacODESolver (class in cbcbeat.cellsolver)
cbcbeat (module)
cbcbeat.bidomainsolver (module)
cbcbeat.cardiacmodels (module)
cbcbeat.cellmodels (module)
cbcbeat.cellmodels.beeler_reuter_1977 (module)
cbcbeat.cellmodels.cardiaccellmodel (module)
cbcbeat.cellmodels.fenton_karma_1998_BR_altered (module)
cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered (module)
cbcbeat.cellmodels.fitzhughnagumo (module)
cbcbeat.cellmodels.fitzhughnagumo_manual (module)
cbcbeat.cellmodels.grandi_pasqualini_bers_2010 (module)
cbcbeat.cellmodels.nocellmodel (module)
cbcbeat.cellmodels.rogers_mcculloch_manual (module)
cbcbeat.cellmodels.tentusscher_2004_mcell (module)
cbcbeat.cellmodels.tentusscher_2004_mcell_cont (module)
cbcbeat.cellmodels.tentusscher_2004_mcell_disc (module)
cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell (module)
cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell (module)
cbcbeat.cellsolver (module)
cbcbeat.dolfinimport (module)
cbcbeat.gossplittingsolver (module)
cbcbeat.gotran2cellmodel (module)
cbcbeat.gotran2dolfin (module)
cbcbeat.markerwisefield (module)
cbcbeat.monodomainsolver (module)
cbcbeat.splittingsolver (module)
cbcbeat.utils (module)
cell_models() (cbcbeat.cardiacmodels.CardiacModel method)
conductivities() (cbcbeat.cardiacmodels.CardiacModel method)
convergence_rate() (in module cbcbeat.utils)
D
default_initial_conditions() (cbcbeat.cellmodels.beeler_reuter_1977.Beeler_reuter_1977 static method)
(cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel static method)
(cbcbeat.cellmodels.fenton_karma_1998_BR_altered.Fenton_karma_1998_BR_altered static method)
(cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered.Fenton_karma_1998_MLR1_altered static method)
(cbcbeat.cellmodels.fitzhughnagumo.Fitzhughnagumo static method)
(cbcbeat.cellmodels.fitzhughnagumo_manual.FitzHughNagumoManual static method)
(cbcbeat.cellmodels.grandi_pasqualini_bers_2010.Grandi_pasqualini_bers_2010 static method)
(cbcbeat.cellmodels.nocellmodel.NoCellModel static method)
(cbcbeat.cellmodels.rogers_mcculloch_manual.RogersMcCulloch static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell.Tentusscher_2004_mcell static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_cont.Tentusscher_2004_mcell_cont static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_disc.Tentusscher_2004_mcell_disc static method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell.Tentusscher_panfilov_2006_M_cell static method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell.Tentusscher_panfilov_2006_epi_cell static method)
default_parameters() (cbcbeat.bidomainsolver.BasicBidomainSolver static method)
(cbcbeat.bidomainsolver.BidomainSolver static method)
(cbcbeat.cellmodels.beeler_reuter_1977.Beeler_reuter_1977 static method)
(cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel static method)
(cbcbeat.cellmodels.fenton_karma_1998_BR_altered.Fenton_karma_1998_BR_altered static method)
(cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered.Fenton_karma_1998_MLR1_altered static method)
(cbcbeat.cellmodels.fitzhughnagumo.Fitzhughnagumo static method)
(cbcbeat.cellmodels.fitzhughnagumo_manual.FitzHughNagumoManual static method)
(cbcbeat.cellmodels.grandi_pasqualini_bers_2010.Grandi_pasqualini_bers_2010 static method)
(cbcbeat.cellmodels.rogers_mcculloch_manual.RogersMcCulloch static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell.Tentusscher_2004_mcell static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_cont.Tentusscher_2004_mcell_cont static method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_disc.Tentusscher_2004_mcell_disc static method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell.Tentusscher_panfilov_2006_M_cell static method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell.Tentusscher_panfilov_2006_epi_cell static method)
(cbcbeat.cellsolver.BasicCardiacODESolver static method)
(cbcbeat.cellsolver.CardiacODESolver static method)
(cbcbeat.gossplittingsolver.GOSSplittingSolver static method)
(cbcbeat.gotran2dolfin.DOLFINCodeGenerator static method)
(cbcbeat.monodomainsolver.BasicMonodomainSolver static method)
(cbcbeat.monodomainsolver.MonodomainSolver static method)
(cbcbeat.splittingsolver.BasicSplittingSolver static method)
(cbcbeat.splittingsolver.SplittingSolver static method)
(cbcbeat.utils.Projecter static method)
DOLFINCodeGenerator (class in cbcbeat.gotran2dolfin)
domain() (cbcbeat.cardiacmodels.CardiacModel method)
E
end_of_time() (in module cbcbeat.utils)
extracellular_conductivity() (cbcbeat.cardiacmodels.CardiacModel method)
F
F() (cbcbeat.cellmodels.beeler_reuter_1977.Beeler_reuter_1977 method)
(cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
(cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
(cbcbeat.cellmodels.fenton_karma_1998_BR_altered.Fenton_karma_1998_BR_altered method)
(cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered.Fenton_karma_1998_MLR1_altered method)
(cbcbeat.cellmodels.fitzhughnagumo.Fitzhughnagumo method)
(cbcbeat.cellmodels.fitzhughnagumo_manual.FitzHughNagumoManual method)
(cbcbeat.cellmodels.grandi_pasqualini_bers_2010.Grandi_pasqualini_bers_2010 method)
(cbcbeat.cellmodels.nocellmodel.NoCellModel method)
(cbcbeat.cellmodels.rogers_mcculloch_manual.RogersMcCulloch method)
(cbcbeat.cellmodels.tentusscher_2004_mcell.Tentusscher_2004_mcell method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_cont.Tentusscher_2004_mcell_cont method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_disc.Tentusscher_2004_mcell_disc method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell.Tentusscher_panfilov_2006_M_cell method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell.Tentusscher_panfilov_2006_epi_cell method)
Fenton_karma_1998_BR_altered (class in cbcbeat.cellmodels.fenton_karma_1998_BR_altered)
Fenton_karma_1998_MLR1_altered (class in cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered)
Fitzhughnagumo (class in cbcbeat.cellmodels.fitzhughnagumo)
FitzHughNagumoManual (class in cbcbeat.cellmodels.fitzhughnagumo_manual)
function_code() (cbcbeat.gotran2dolfin.DOLFINCodeGenerator method)
G
GOSSplittingSolver (class in cbcbeat.gossplittingsolver)
Grandi_pasqualini_bers_2010 (class in cbcbeat.cellmodels.grandi_pasqualini_bers_2010)
H
handle_markerwise() (in module cbcbeat.markerwisefield)
I
I() (cbcbeat.cellmodels.beeler_reuter_1977.Beeler_reuter_1977 method)
(cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
(cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
(cbcbeat.cellmodels.fenton_karma_1998_BR_altered.Fenton_karma_1998_BR_altered method)
(cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered.Fenton_karma_1998_MLR1_altered method)
(cbcbeat.cellmodels.fitzhughnagumo.Fitzhughnagumo method)
(cbcbeat.cellmodels.fitzhughnagumo_manual.FitzHughNagumoManual method)
(cbcbeat.cellmodels.grandi_pasqualini_bers_2010.Grandi_pasqualini_bers_2010 method)
(cbcbeat.cellmodels.nocellmodel.NoCellModel method)
(cbcbeat.cellmodels.rogers_mcculloch_manual.RogersMcCulloch method)
(cbcbeat.cellmodels.tentusscher_2004_mcell.Tentusscher_2004_mcell method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_cont.Tentusscher_2004_mcell_cont method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_disc.Tentusscher_2004_mcell_disc method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell.Tentusscher_panfilov_2006_M_cell method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell.Tentusscher_panfilov_2006_epi_cell method)
init_parameters_code() (cbcbeat.gotran2dolfin.DOLFINCodeGenerator method)
init_states_code() (cbcbeat.gotran2dolfin.DOLFINCodeGenerator method)
initial_conditions() (cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
(cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
intracellular_conductivity() (cbcbeat.cardiacmodels.CardiacModel method)
K
keys() (cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
(cbcbeat.markerwisefield.Markerwise method)
L
linear_solver (cbcbeat.bidomainsolver.BidomainSolver attribute)
(cbcbeat.monodomainsolver.MonodomainSolver attribute)
M
markers() (cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
(cbcbeat.markerwisefield.Markerwise method)
Markerwise (class in cbcbeat.markerwisefield)
merge() (cbcbeat.gossplittingsolver.GOSSplittingSolver method)
(cbcbeat.splittingsolver.BasicSplittingSolver method)
mesh() (cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
models() (cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
MonodomainSolver (class in cbcbeat.monodomainsolver)
MultiCellModel (class in cbcbeat.cellmodels.cardiaccellmodel)
N
NoCellModel (class in cbcbeat.cellmodels.nocellmodel)
nullspace (cbcbeat.bidomainsolver.BidomainSolver attribute)
num_models() (cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
num_states() (cbcbeat.cellmodels.beeler_reuter_1977.Beeler_reuter_1977 method)
(cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
(cbcbeat.cellmodels.cardiaccellmodel.MultiCellModel method)
(cbcbeat.cellmodels.fenton_karma_1998_BR_altered.Fenton_karma_1998_BR_altered method)
(cbcbeat.cellmodels.fenton_karma_1998_MLR1_altered.Fenton_karma_1998_MLR1_altered method)
(cbcbeat.cellmodels.fitzhughnagumo.Fitzhughnagumo method)
(cbcbeat.cellmodels.fitzhughnagumo_manual.FitzHughNagumoManual method)
(cbcbeat.cellmodels.grandi_pasqualini_bers_2010.Grandi_pasqualini_bers_2010 method)
(cbcbeat.cellmodels.nocellmodel.NoCellModel method)
(cbcbeat.cellmodels.rogers_mcculloch_manual.RogersMcCulloch method)
(cbcbeat.cellmodels.tentusscher_2004_mcell.Tentusscher_2004_mcell method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_cont.Tentusscher_2004_mcell_cont method)
(cbcbeat.cellmodels.tentusscher_2004_mcell_disc.Tentusscher_2004_mcell_disc method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell.Tentusscher_panfilov_2006_M_cell method)
(cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell.Tentusscher_panfilov_2006_epi_cell method)
P
parameters() (cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
Projecter (class in cbcbeat.utils)
R
rhs_with_markerwise_field() (in module cbcbeat.markerwisefield)
RogersMcCulloch (class in cbcbeat.cellmodels.rogers_mcculloch_manual)
S
set_initial_conditions() (cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
set_parameters() (cbcbeat.cellmodels.cardiaccellmodel.CardiacCellModel method)
SingleCellSolver (class in cbcbeat.cellsolver)
solution_fields() (cbcbeat.bidomainsolver.BasicBidomainSolver method)
(cbcbeat.cellsolver.BasicCardiacODESolver method)
(cbcbeat.cellsolver.CardiacODESolver method)
(cbcbeat.gossplittingsolver.GOSSplittingSolver method)
(cbcbeat.monodomainsolver.BasicMonodomainSolver method)
(cbcbeat.splittingsolver.BasicSplittingSolver method)
solve() (cbcbeat.bidomainsolver.BasicBidomainSolver method)
(cbcbeat.cellsolver.BasicCardiacODESolver method)
(cbcbeat.cellsolver.CardiacODESolver method)
(cbcbeat.gossplittingsolver.GOSSplittingSolver method)
(cbcbeat.monodomainsolver.BasicMonodomainSolver method)
(cbcbeat.splittingsolver.BasicSplittingSolver method)
SplittingSolver (class in cbcbeat.splittingsolver)
state_space() (in module cbcbeat.utils)
step() (cbcbeat.bidomainsolver.BasicBidomainSolver method)
(cbcbeat.bidomainsolver.BidomainSolver method)
(cbcbeat.cellsolver.BasicCardiacODESolver method)
(cbcbeat.cellsolver.CardiacODESolver method)
(cbcbeat.gossplittingsolver.GOSSplittingSolver method)
(cbcbeat.monodomainsolver.BasicMonodomainSolver method)
(cbcbeat.monodomainsolver.MonodomainSolver method)
(cbcbeat.splittingsolver.BasicSplittingSolver method)
stimulus() (cbcbeat.cardiacmodels.CardiacModel method)
T
Tentusscher_2004_mcell (class in cbcbeat.cellmodels.tentusscher_2004_mcell)
Tentusscher_2004_mcell_cont (class in cbcbeat.cellmodels.tentusscher_2004_mcell_cont)
Tentusscher_2004_mcell_disc (class in cbcbeat.cellmodels.tentusscher_2004_mcell_disc)
Tentusscher_panfilov_2006_epi_cell (class in cbcbeat.cellmodels.tentusscher_panfilov_2006_epi_cell)
Tentusscher_panfilov_2006_M_cell (class in cbcbeat.cellmodels.tentusscher_panfilov_2006_M_cell)
time (cbcbeat.bidomainsolver.BasicBidomainSolver attribute)
(cbcbeat.cellsolver.BasicCardiacODESolver attribute)
(cbcbeat.monodomainsolver.BasicMonodomainSolver attribute)
time() (cbcbeat.cardiacmodels.CardiacModel method)
V
values() (cbcbeat.markerwisefield.Markerwise method)
variational_forms() (cbcbeat.bidomainsolver.BidomainSolver method)
(cbcbeat.monodomainsolver.MonodomainSolver method)
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